Showing : DiffBind • reset
0
votes
0
replies
83
views
DiffBind plot.profile error
BiocParallel DiffBind
21 days ago this_is_me_trying • 0
0
votes
0
replies
578
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
6 weeks ago Muhammad • 0
1
vote
8
replies
4.5k
views
DiffBind - question on the use of filtered or unfiltered input data
DiffBind
written 2.2 years ago by ▴ 10
0
votes
0
replies
232
views
I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
10 weeks ago atlanta • 0
0
votes
4
replies
2.1k
views
DiffBind can't find a DAR
dar ATACSeq DiffBind
11 weeks ago • updated 9 weeks ago Mengjun • 0
0
votes
0
replies
124
views
DiffBind multi-tissue comparison
DiffBind
3 months ago lryrainche • 0
1
vote
8
replies
2.4k
views
[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw ChIPseq DESeq2 DiffBind
3 months ago • updated 11 weeks ago Luca • 0
0
votes
0
replies
211
views
DiffBind recommendation on using IgG bams
peakcalling DiffBind
3 months ago Harish • 0
0
votes
4
replies
1.2k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR DiffBind
updated 3 months ago by • 0 • written 3 months ago by • 0
0
votes
1
reply
217
views
building samplesheet and plot profile
DiffBind
4 months ago yf • 0
0
votes
5
replies
579
views
Diffbind interpretation of data - fold change
DiffBind
5 months ago Vera • 0
0
votes
0
replies
453
views
Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
7 months ago kim • 0
0
votes
0
replies
305
views
diffbind covariates
DiffBind ATACSeq
updated 8 months ago by 43k • written 8 months ago by ▴ 220
0
votes
2
replies
815
views
DiffBind dba.report discrepancy
DiffBind
8 months ago aelbassiouny • 0
0
votes
0
replies
229
views
DiffBind subset replicates
DiffBind
8 months ago Haiping • 0
0
votes
0
replies
435
views
Background normalization of Diffbind dba.normalize
Normalization DiffBind
8 months ago Young Boqin • 0
0
votes
0
replies
379
views
Trying to understand basic DiffBind usage
ChIPSeq DiffBind
9 months ago Alejandro • 0
0
votes
2
replies
525
views
DiffBind for MBD-seq
MBD-seq DiffBind
10 months ago Marianna ▴ 20
0
votes
1
reply
614
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
10 months ago • updated 4 months ago Ian D. ▴ 70
0
votes
1
reply
469
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
10 months ago mdidish ▴ 10
0
votes
0
replies
385
views
DiffBind dba.plotprofile y-axis range
DiffBind
10 months ago Tara • 0
0
votes
8
replies
1.1k
views
DiffBind full library size not reliable
DiffBind Reads MACS2 FullLibSize
updated 10 months ago by ★ 5.2k • written 10 months ago by ▴ 20
1
vote
3
replies
770
views
Create merged ChIP heatmap across conditions
DiffBind profileplyr
updated 11 months ago by ★ 5.2k • written 11 months ago by • 0
0
votes
0
replies
573
views
Blacklist regions on DBA object (diffbind)
DiffBind chipseq
12 months ago gamma.jian ▴ 10
0
votes
2
replies
763
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind DifferentialPeakCalling
12 months ago Mallory • 0
0
votes
0
replies
409
views
Difference in Contrast in DiffBind
DiffBind
13 months ago user_bioinfo • 0
0
votes
0
replies
423
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
13 months ago Dinesh • 0
0
votes
1
reply
847
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 7 months ago by • 0 • written 13 months ago by ▴ 10
0
votes
0
replies
583
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
13 months ago yvonneh • 0
0
votes
0
replies
392
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
13 months ago Ian D. ▴ 70
0
votes
9
replies
1.6k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
14 months ago • updated 8 months ago Ian D. ▴ 70
3
votes
1
reply
771
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 14 months ago by 43k • written 14 months ago by ▴ 10
0
votes
1
reply
1.2k
views
ATACseq merge peaks
DiffBind
updated 14 months ago by ★ 4.9k • written 14 months ago by • 0
0
votes
4
replies
769
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
14 months ago lonn • 0
0
votes
0
replies
420
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
14 months ago Virangika • 0
2
votes
2
replies
901
views
[DiffBind] Obtaining normalization factors
DiffBind
14 months ago Henry ▴ 10
2
votes
2
replies
1.5k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
14 months ago Henry ▴ 10
0
votes
0
replies
517
views
How to extract the coordinate of dba.plotPCA?
DiffBind PCA
15 months ago feather-W • 0
0
votes
0
replies
544
views
PCA plot for normalized counts using Diffbind
DiffBind PCAplot
15 months ago Ankit ▴ 20
0
votes
0
replies
517
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
15 months ago Pierre Lindenbaum ▴ 10
0
votes
0
replies
501
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
15 months ago erbrocato • 0
0
votes
2
replies
798
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
15 months ago Sam ▴ 10
0
votes
1
reply
629
views
Exact same results in Diffbind with different normalization methods
DiffBind
15 months ago red_bricks ▴ 60
0
votes
1
reply
849
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
17 months ago isaromero8888 • 0
0
votes
0
replies
853
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
17 months ago Jawahar • 0
0
votes
0
replies
493
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
17 months ago frueher • 0
0
votes
0
replies
468
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
17 months ago Aswathy • 0
0
votes
0
replies
684
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
18 months ago Hai • 0
0
votes
0
replies
587
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
18 months ago inna.gur • 0
2
votes
2
replies
1.8k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 8 weeks ago by • 0 • written 22 months ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t by James W. MacDonald 68k
The comment you responded to comes from a bot (which you can always tell because it has a link embedded that leads to a game site or whatev…
Answer: TopGO question by James W. MacDonald 68k
Please note that `genesInTerm` provides exactly what one might expect a function with that name might provide - the genes that are annotate…
Comment: TopGO question by Hannah • 0
df <- data.frame( Gene = results2$Gene, PV = results2$`Pr(>|t|)`, Estimate = results2$Estimate ) rownames(df) <- df$Gene valid_gene…
Comment: Many transcripts missing from tx2gene created from Ensembl GTF file by Abbott • 0
Thank you so much
Comment: European Bioconductor Conference 2023 planning by net • 0
Great. I will join it. [Crazy Games][1] [1]: https://avbgames.net/crazy-games
Votes
Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
Answer: Is voomByGroup available in limma?
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
Comment: Ensembl 114 / Ensembl Genomes 61 has been released!
Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
Awards • All
Popular Question to shepherl 4.1k
Popular Question to caroline.zanchi ▴ 10
Popular Question to James W. MacDonald 68k
Popular Question to Alexander • 0
Scholar to ATpoint ★ 4.9k
Locations • All
United States, 5 minutes ago
United States, 1 hour ago
Germany, 2 hours ago
United States, 2 hours ago
United States, 4 hours ago
Traffic: 988 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6
OSZAR »