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Answer: ChAMP pipeline error (champ.import) by macdonaldfrench7286566 • 0

Confirm your pd file has the exact required column headers for ChAMP to find the IDAT paths (e.g., Slide, Array, Basename, or explicit path…

Answer: Problem in Chip-seq data analysis using MACS3 by ATpoint ★ 4.9k

This standalone tool is not part of Bioconductor, you would be better off asking at biostars.org or bioinformatics reddit. Generally, two t…

Comment: Input peak set for DiffBind should be all peaks or FDR filtered? by Nellie • 0

I feel that the knowledge shared is very practical and useful for both work and life. I wish the author will continue to have many great ar…

Comment: Problem in Chip-seq data analysis using MACS3 by Nellie • 0

Thank you to the author for bringing a very high-quality article! Every sentence, every word is carefully crafted, clearly showing the writ…

Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low by Michael Love 43k

It has to come from the biology. What is a meaningful fold change in the system. Depending on context that could be doubling (1) or increas…

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Answer: Is voomByGroup available in limma?

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Scholar to ATpoint ★ 4.9k