Showing : minfi • reset
0
votes
3
replies
833
views
Merging EPICV1 and V2 betas
minfiDataEPIC minfi
updated 17 days ago by • 0 • written 11 weeks ago by • 0
1
vote
2
replies
655
views
normalizatino of dna methylation EPIC data
DNA minfiData minfiDataEPIC DNAMethylation minfi
3 months ago user_bioinfo • 0
4
votes
8
replies
1.5k
views
how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
DMRcate minfi
6 months ago • updated 3 months ago xiaofeiwang198266 • 0
1
vote
4
replies
758
views
Handling Epic Array Data
minfi
6 months ago Melisa Tecik • 0
2
votes
2
replies
633
views
preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
7 months ago • updated 6 months ago Rakesh • 0
2
votes
5
replies
845
views
dmpFinder for other objects
methylset minfi dmpFinder betaHMM beta
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
2
replies
844
views
DMPs enrichment for MOUSE DNA methylation array
minfi mCSEA missme missMethyl
updated 9 months ago by • 0 • written 10 months ago by • 0
4
votes
12
replies
5.2k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 10 months ago by ▴ 230 • written 19 months ago by ▴ 20
0
votes
1
reply
641
views
minfi - bumphunter value problem
bumphunter minfiData minfi bumphun
updated 11 months ago by 68k • written 11 months ago by • 0
0
votes
0
replies
581
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
11 months ago pcibin • 0
0
votes
2
replies
975
views
Epicv2 conversion fail
minfi
12 months ago • updated 11 months ago Alex • 0
2
votes
3
replies
2.0k
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 5 months ago by • 0 • written 13 months ago by • 0
1
vote
4
replies
708
views
minfi::read.metharray.exp
minfiData minfi
updated 13 months ago by ▴ 780 • written 14 months ago by • 0
0
votes
4
replies
906
views
Minfi - estimatecellscount
min minfi
updated 13 months ago by 68k • written 14 months ago by • 0
0
votes
0
replies
691
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
15 months ago Felix • 0
0
votes
1
reply
545
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 15 months ago by 68k • written 15 months ago by • 0
0
votes
7
replies
1.2k
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 16 months ago by 68k • written 16 months ago by • 0
1
vote
2
replies
2.7k
views
EPIC array hg38 annotation?
minfi DMRcate
16 months ago mycetes • 0
0
votes
0
replies
1.0k
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
18 months ago kyj2226 • 0
3
votes
2
replies
1.2k
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
18 months ago kyj2226 • 0
0
votes
1
reply
791
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
0
votes
5
replies
1.7k
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
20 months ago dorota.komar • 0
0
votes
2
replies
1.4k
views
minfi differential methylation analysis errors
minfi
20 months ago matthew.sinton • 0
0
votes
3
replies
1.2k
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 20 months ago by ▴ 780 • written 20 months ago by • 0
0
votes
14
replies
4.1k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 16 months ago by • 0 • written 21 months ago by • 0
1
vote
1
reply
858
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
updated 21 months ago by 68k • written 21 months ago by ▴ 10
0
votes
3
replies
1.6k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by ▴ 10
0
votes
2
replies
940
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 14 months ago by • 0 • written 2.1 years ago by • 0
0
votes
1
reply
935
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.2 years ago by 52k • written 2.2 years ago by • 0
0
votes
0
replies
676
views
cpgCollapse error
450K blockfinder cpgCollapse minfi
2.2 years ago edward.esiribloom • 0
6
votes
6
replies
10.0k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 8 months ago by • 0 • written 2.2 years ago by ▴ 50
0
votes
1
reply
976
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
4
replies
1.7k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
1
vote
3
replies
1.5k
views
Analysing Genome Studio .txt files with minfi
minfi
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
5
replies
2.1k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.3 years ago by • 0
0
votes
1
reply
1.3k
views
Minfi::read.metharray.sheet, problem with pattern defined in non-local csv file
PatternLogic read.metharray.sheet list.files minfi
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
2
votes
3
replies
1.8k
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 2.4 years ago by ▴ 40 • written 2.4 years ago by • 0
0
votes
1
reply
1.6k
views
minfi read.metharray.sheet error
minfi
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
1
reply
1.6k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile noob Normalization minfi minfiDataEPIC
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
0
replies
879
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
2.9 years ago calen.p.ryan • 0
0
votes
0
replies
1.0k
views
Error: 'bumphunter()' only supports matrix-backed minfi objects.
bumphunter minfi genomi
3.0 years ago runye • 0
0
votes
1
reply
1.4k
views
what is the format of DMPfinder in minfi package
minfi
updated 3.0 years ago by ▴ 780 • written 3.1 years ago by • 0
0
votes
3
replies
1.6k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
3.2 years ago • updated 3.1 years ago ramonfallon ▴ 20
0
votes
2
replies
3.5k
views
Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation
updated 3.1 years ago by • 0 • written 9.7 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Annotation Illumina Infinium Mouse Methylation
Illumina minfi IlluminaHumanMethylationEPICmanifest
3.2 years ago octaviompa • 0
0
votes
0
replies
877
views
Minfi package: controlStripPlot colors
minfi
3.3 years ago Rebecca • 0
0
votes
1
reply
1.3k
views
Over 800,000 probes failing to meet Detection P-value - minfi
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 failingprobes detectionP minfi
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
votes
9
replies
4.0k
views
clarification about bumphunter value output
minfi bumphunter
updated 2.1 years ago by • 0 • written 7.3 years ago by • 0
0
votes
1
reply
1.3k
views
EPIC ARRAY ANALYSIS
minfiDataEPIC #SexPrediction minfi
updated 3.7 years ago by ▴ 780 • written 3.7 years ago by • 0
0
votes
0
replies
1.1k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.8 years ago ponche_de_kiwi • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to detect LacZ tagged cells from single cell by Geohearttry • 0
how it works, what kinds of players it attracts, the level [Geometry Dash](https://geometrydashfullversion.io/) design options available, a…
Comment: save.rnb.set warnings when trying to save rnb.set by juansmurphy • 0
No idea. [slope][1] [1]: https://slope3.com
Comment: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st! by Ray • 0
This minimalist approach ensures that success depends entirely on your skill, making every victory feel earned in [speed stars online][1] …
Answer: Retrieve Salmon transcript quantification file from recount3 by Leonardo Collado Torres ★ 1.1k
Hi K, The Salmon quantification files are not available at https://aws.amazon.com/marketplace/pp/prodview-t3rflz3f557jq or JHU IDIES Sci…
Answer: error from library(IlluminaHumanMethylationMSAmanifest) by James W. MacDonald 68k
Thanks for the heads-up! I have fixed the typos and the updated version should be available for download in the next few days.
Votes
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
Comment: Ensembl 114 / Ensembl Genomes 61 has been released!
Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
Answer: Deseq2 paired sample in the design is considered as "batch"?
Awards • All
Popular Question to James Perkins ▴ 60
Popular Question to shepherl 4.1k
Popular Question to svlachavas ▴ 840
Popular Question to picasa1983 • 0
Popular Question to Ferdinand David • 0
Locations • All
Denmark, 26 minutes ago
United States, 45 minutes ago
Barcelona, Spain, 1 hour ago
Spain, 1 hour ago
San Diego, 2 hours ago
Traffic: 795 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6
OSZAR »